Biological Classification

Complete Notes

Contents Early Classification Systems Two Kingdom System Five Kingdom System Kingdom Monera Kingdom Protista Kingdom Fungi Lichens Viruses, Viroids and Prions Practice Questions Download Notes

Early Classification Systems

The oldest classification of organisms was non-scientific, based on uses:

Two Kingdom System

The Two Kingdom System was given by Linnaeus — organisms were classified into:

KingdomExamples
PlantaeChlamydomonas, Eubacteria, Chlorella, Fungi, Algae, Bryophytes, Pteridophytes, Gymnosperms, Angiosperms
AnimaliaAmoeba, Paramecium, Earthworm, Insects, Monkey, Human

Demerits of Two Kingdom System

Therefore, there was a need for more systems with better criteria.

Three and Four Kingdom Systems

Kingdom Protista was introduced by Haeckel — for unicellular eukaryotic organisms.
Kingdom Monera was introduced by Copeland — for prokaryotic organisms.

Five Kingdom System

The Five Kingdom System was given by R. H. Whittaker (1969). It uses the following main criteria:

The Five Kingdoms

KingdomCell TypeCell WallNutritionExamples
MoneraUnicellular, ProkaryoticPresent, made of peptidoglycan (protein + sugar)Mostly heterotrophic, some autotrophicBacteria, Cyanobacteria (BGA)
ProtistaUnicellular, EukaryoticCell wall may be present or absentBoth Autotrophic and Heterotrophic (mixotrophic)Chlamydomonas, Amoeba, Paramecium
FungiMostly multicellular, EukaryoticPresent, made of ChitinHeterotrophic (saprophytic/parasitic)Yeast, Mushroom, Penicillium
PlantaeMulticellular, EukaryoticPresent, made of CelluloseAutotrophic (photosynthetic)Algae, Bryophytes, Pteridophytes, Gymnosperms, Angiosperms
AnimaliaMulticellular, EukaryoticAbsentHeterotrophic (ingest then digest)All animals

Six Kingdom System (Domain System)

The Six Kingdom System (Domain System) was given by Carl Woese:

Kingdom Monera

Bacteria are the sole members of Kingdom Monera. They are Cosmopolitan — present everywhere. In fact, a handful of soil can contain hundreds of bacteria.

Bacteria — Shapes

Note: Prokaryotes have a simple structure but are metabolically very complex/active. They show high nutritional diversity.

Archaebacteria

Archaebacteria are extremophiles — they can live in extreme harsh habitats:

TypeHabitat
ThermoacidophilesLive in hot, acidic environments
HalophilesSalt-loving bacteria
MethanogensLive in marshy areas (O₂ absent); also found in the gut of ruminants — produce methane, used in making Biogas (Gobar gas) from cattle dung
Archaebacteria cell wall: Differs from Eubacteria — lacks the typical peptidoglycan (murein) found in Eubacteria, having a different chemical composition that allows them to survive in harsh conditions.

Eubacteria ("True Bacteria")

Eubacteria have a characteristic cell wall and may have flagella (if motile).

Useful Bacteria

UseExample / Detail
Curd formationLAB (Lactic Acid Bacteria) — e.g. Lactobacillus
Antibiotic formationStreptomycin, Neomycin — from Streptomyces species
Nitrogen fixation (N₂)Some bacteria fix N₂ inside root nodules of legume plants like Pea, Bean
DecompositionBacteria convert organic matter on dead/decaying material into simpler substances — perform decomposition

Parasitic Bacteria — Examples

DiseaseCausal Bacteria
CholeraVibrio cholerae
TyphoidSalmonella typhi
Citrus CankerXanthomonas citri
TetanusClostridium tetani
Bacteria can be Ectoparasites (suck nutrition from the host's outer surface) or Endoparasites (live inside host) — found on both plants and animals, often causing disease.

Modes of Nutrition in Bacteria

Autotrophic Bacteria:

Cyanobacteria (Blue-Green Algae — BGA)

Reproduction in Bacteria

1. Vegetative Reproduction: Binary fission (under favourable conditions).
2. Asexual Reproduction: Spore formation (under unfavourable conditions — spores are resistant).
3. True Sexual Reproduction (Genetic recombination): Occurs via Conjugation — DNA transfer between two bacterial cells through a Sex pilus, often involving a Plasmid (F-factor).

Mycoplasma (PPLO)

Kingdom Protista

Kingdom Protista was introduced by Haeckel, before Kingdom Monera was introduced. It contains unicellular eukaryotic organisms with a well-defined nucleus and membrane-bound organelles.

Protista acts as a connecting link between Kingdom Monera, Plantae, Fungi and Animalia. Boundaries of this kingdom are not very well defined. Members may or may not have cell walls, and may or may not have cilia/flagella. They reproduce both asexually (e.g. fission, similar to Monera-like reproduction) and sexually (by cell fusion and zygote formation, similar to Plant/Animal-like reproduction).

Groups in Kingdom Protista

GroupExamples / Features
ChrysophytesIncludes Diatoms and Desmids — golden algae, found in fresh water and marine habitats. Cell wall present, made of two halves (Epitheca and Hypotheca) that fit together like a soap box, with deposition of silica (siliceous shells) — cell walls are indestructible. Diatoms are the major producers in oceans, and their cell wall deposits accumulate at the ocean floor over time.
DinoflagellatesMostly marine and photosynthetic. Cell wall has stiff cellulose plates on the outer surface, with two flagella (one longitudinal, one transverse), present in furrows/grooves. They show various colours — yellow, green, brown, blue, red — depending on the main pigments present (e.g. Chlorophyll a/c, Carotenoids, Fucoxanthin, Phycocyanin, Phycoerythrin). Rapid multiplication of red-pigmented dinoflagellates (e.g. Gonyaulax) causes "Red Tide" — secretes toxins like Saxitoxin which can kill fish and other marine organisms.
EuglenoidsMostly found in fresh/stagnant water. Cell wall absent — instead, they have a protein-rich layer called pellicle, which makes the cell flexible. Have two flagella (one long, one short). They are mixotrophic — behave like autotrophs (photosynthetic, contain chlorophyll) in sunlight, and like heterotrophs (predatory) in absence of light. e.g. Euglena.
Slime MouldsSaprophytic protists. The body moves and grows on decaying twigs and leaves, forming an aggregation that can be visible to the naked eye. Under unfavourable conditions, the slime mould differentiates and forms fruiting bodies bearing spores at their tips — these spores have true walls that are resistant, and are dispersed to form new slime moulds.
ProtozoansPrimitive relatives of animals (animal-like protists), considered ancestral to animals. Heterotrophic (predatory or parasitic). Includes: Amoeboid (e.g. Amoeba, Entamoeba — causes Dysentery, an intestinal issue), Flagellated (e.g. Trypanosoma), Ciliated (e.g. Paramecium — moves via cilia), and Sporozoans (spore-like, e.g. Plasmodium — causes Malaria).

Kingdom Fungi

Members of Kingdom Fungi are mostly multicellular (except yeast, which is unicellular) and filamentous. They are Eukaryotes. Cell wall is made of Chitin + Glucan.

Modes of Nutrition

ModeDescription
SaprophyticGrow on dead organic matter and decaying material.
ParasiticTake nutrition from a living host body.
SymbioticLive in mutually beneficial relationships. e.g. Lichen (with algae), Mycorrhiza (with plant roots).

Common Fungi Around Us

Important Fungi — Antibiotics and Diseases

FungusSignificance
Penicillium notatumSource of Penicillin — the first antibiotic discovered
Albugo candidaObligate parasite causing white rust disease on Mustard plant
Puccinia graminisCauses Black Rust on wheat — parasitic on different plants and animals

Habitat of Fungi

Fungi are Cosmopolitan — found everywhere — in air, soil, water, on plants and animals. They grow efficiently and show great morphological diversity in warm, humid, moist/damp conditions; they grow less in cold (e.g. in refrigerators).

Structure of Fungi

The body of most fungi is made of long, filamentous structures called Hyphae. The network of hyphae is called the Mycelium.

Coenocytic (Aseptate) Hyphae: Hyphae without cross walls (septa) — continuous, multinucleate cytoplasm. e.g. Phycomycetes.
Septate Hyphae: Hyphae with cross walls (septa) separating cells, may have one or more nuclei per cell. e.g. Ascomycetes, Basidiomycetes.

Reproduction in Fungi

Vegetative Reproduction: By Fragmentation, Fission, Budding — no specialised structures formed.
Asexual Reproduction: By formation of spores — e.g. Zoospores, Conidiospores, Sporangiospores.
Sexual Reproduction: By formation of spores — e.g. Oospores, Ascospores, Basidiospores. Involves three steps:
  1. Plasmogamy: Fusion of protoplasm between two motile or non-motile gametes.
  2. Karyogamy: Fusion of two nuclei.
  3. Meiosis (Reductional division): Restores haploid number — produces haploid spores.
In Ascomycetes and Basidiomycetes, after plasmogamy the two nuclei do not fuse immediately — they exist together as a Dikaryotic stage (n+n) for some time before karyogamy occurs.

Classes of Fungi

Phycomycetes

Ascomycetes (Sac Fungi)

Claviceps: Source of LSD (Lysergic acid diethylamide).

Basidiomycetes

Deuteromycetes ("Imperfect Fungi")

Lichens

A Lichen is a symbiotic association between Fungi (called Mycobiont) and Algae (called Phycobiont).

Mycorrhiza

Mycorrhiza is a symbiotic association between Fungi and the roots of higher plants. The fungus increases the surface area of roots for absorption of water and minerals (especially Phosphorus), and also protects roots from pathogens.

Viruses, Viroids, and Prions

Demerits of Whittaker's Five Kingdom System (Why Some Need Special Mention)

The Five Kingdom System included only autotrophs and heterotrophs (cellular organisms) in the five kingdoms. However, Kingdom Protista contained some unrelated organisms grouped together, just based on criteria like cell wall presence/absence and cilia/flagella presence/absence. Also, non-cellular infectious particles like Viruses, Viroids, and Prions could not be placed in any of the five kingdoms, since they lack a cell.

Viruses

The term "virus" comes from "venum vivum fluidum", meaning "poisonous fluid".

Virus — Size and Structure

PropertyDetail
Size0.02 - 0.2 μm — much smaller than bacteria (compared to bacteria: 1-2 μm)
NatureInert/inactive (acellular) when outside a host cell. They have no protoplasm or independent metabolism. Once they infect a living cell, they take over the host's cellular machinery to make more copies of themselves, which spreads the infection.
CapsidOuter protein coat surrounding the nucleic acid — made of many small subunits called Capsomeres
Genetic MaterialA virus can have either DNA or RNA as its genetic material (never both).

Genetic Material in Different Viruses

Virus TypeGenetic Material
Bacteriophages (infecting bacteria)Mostly double-stranded DNA (dsDNA)
Plant VirusesMostly single-stranded RNA (ssRNA), some double-stranded RNA (dsRNA)
Animal VirusesCan have ssRNA, dsRNA, or DNA — e.g. HIV (RNA virus), Mumps, Measles, Influenza, Polio viruses (RNA viruses)

Effects of Plant Viral Infection

Viroids

Prions

Practice Questions

Q1. Which scientist introduced the Five Kingdom System of classification, and in which year?

(a) Linnaeus, 1758   (b) Haeckel, 1866   (c) R. H. Whittaker, 1969   (d) Carl Woese, 1977

Answer: (c) R. H. Whittaker, 1969

Explanation: R. H. Whittaker proposed the Five Kingdom System in 1969, classifying organisms into Monera, Protista, Fungi, Plantae, and Animalia, based on criteria like cell structure (prokaryotic/eukaryotic), body organisation, mode of nutrition, phylogenetic relationships, and mode of reproduction. Linnaeus gave the earlier Two Kingdom System (Plantae and Animalia), Haeckel introduced Kingdom Protista, and Carl Woese later proposed the Six Kingdom (Domain) System.

Q2. Heterocysts in Cyanobacteria like Nostoc and Anabaena are specialised for which function?

(a) Photosynthesis only   (b) Nitrogen fixation, protected from oxygen   (c) Reproduction by binary fission   (d) Storage of starch

Answer: (b) Nitrogen fixation, protected from oxygen

Explanation: Heterocysts are specialised cells in certain cyanobacteria (e.g. Nostoc, Anabaena) that have thick walls preventing the entry of oxygen. Since the enzyme nitrogenase (responsible for nitrogen fixation) is highly sensitive to oxygen and gets inactivated in its presence, heterocysts provide an oxygen-free environment, allowing these cyanobacteria to fix atmospheric nitrogen (N₂) into usable forms.

Q3. Mycoplasma (PPLO) differs from typical bacteria in which key feature, making it pleomorphic?

(a) Presence of a thick peptidoglycan cell wall   (b) Complete absence of cell wall   (c) Presence of chitin cell wall   (d) Presence of a nuclear membrane

Answer: (b) Complete absence of cell wall

Explanation: Mycoplasma (also called PPLO — Pleuro Pneumonia Like Organisms) is the smallest known living cell, about 0.3 μm in size, and completely lacks a cell wall. Due to the absence of a rigid cell wall, mycoplasma can take on various shapes, a condition called "pleomorphic". Many mycoplasma species are pathogenic and cause diseases in plants such as little leaf of brinjal and phyllody.

Q4. In the reproduction of fungi, what is the correct sequence of events during sexual reproduction?

(a) Karyogamy → Plasmogamy → Meiosis

(b) Plasmogamy → Karyogamy → Meiosis

(c) Meiosis → Plasmogamy → Karyogamy

(d) Plasmogamy → Meiosis → Karyogamy

Answer: (b) Plasmogamy → Karyogamy → Meiosis

Explanation: Sexual reproduction in fungi involves three sequential steps. First, Plasmogamy occurs — the fusion of protoplasm of two motile or non-motile gametes. This is followed by Karyogamy — fusion of the two nuclei. Finally, Meiosis (reductional division) occurs to restore the haploid number, producing haploid spores. In Ascomycetes and Basidiomycetes, there can be a delay between plasmogamy and karyogamy, during which the cell exists in a dikaryotic (n+n) stage.

Q5. Lichens are used as pollution indicators because they are highly sensitive to which pollutant?

(a) Carbon dioxide (CO₂)   (b) Sulphur dioxide (SO₂)   (c) Methane (CH₄)   (d) Ozone (O₃)

Answer: (b) Sulphur dioxide (SO₂)

Explanation: A lichen is a symbiotic association between a fungus (mycobiont) and an alga (phycobiont), where the alga provides food via photosynthesis and the fungus provides shelter, absorbs water/minerals, and increases surface area. Lichens are extremely sensitive to sulphur dioxide (SO₂) pollution and fail to grow or survive in polluted areas with high SO₂ levels, which is why their presence or absence is used as a bioindicator of air pollution.

Q6. Which of the following is the key structural difference between a Virus and a Viroid?

(a) A virus has both DNA and RNA, while a viroid has neither

(b) A virus has a protein capsid around its nucleic acid, while a viroid lacks a protein coat and consists of free RNA only

(c) A virus is larger than a bacterium, while a viroid is smaller than a virus but has a thick cell wall

(d) A virus can reproduce independently, while a viroid cannot infect any host

Answer: (b) A virus has a protein capsid around its nucleic acid, while a viroid lacks a protein coat and consists of free RNA only

Explanation: A virus consists of genetic material (either DNA or RNA, never both) enclosed within a protective protein coat called the capsid, made up of subunits called capsomeres. A viroid, discovered by T. O. Diener (1971) as the cause of Potato Spindle Tuber disease, is smaller than a virus, consists only of free, low molecular weight RNA folded upon itself, and completely lacks the protein capsid that characterises viruses.

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