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Cell – The Unit of Life – Complete Notes

1. Cell – Introduction & Discovery
What is a Cell?
Discovery Timeline
ScientistYearContribution
Robert Hooke1665Discovered cells in dead cork cells using self-made microscope. Named them "cells" (empty compartments like little rooms). Described in book Micrographia.
Antonie Van Leeuwenhoek1674First described LIVING cells — observed free-living cells in pond water. First to describe protozoans.
Robert Brown1831Discovered the Nucleus in plant cells
Schleiden1838German botanist — observed plant cells and proposed all plants are made of cells
Schwann1839British zoologist — observed animal cells and proposed all animals are made of cells. Also proposed cell membrane (now called plasma membrane). Formulated Cell Theory (with Schleiden).
Rudolf Virchow1855Modified Cell Theory — "Omnis cellula-e-cellula" — new cells arise only from pre-existing cells
Cell Theory
Proposed by Schleiden and Schwann (1839):
1. All living organisms are made up of cells and products of cells
2. Cell is the basic unit of life
3. (Modified by Virchow, 1855) New cells arise from pre-existing cells — "Omnis cellula-e-cellula"
Drawback of Cell Theory: Cell theory cannot explain the origin of the first cell. Also does not explain viruses (which are non-cellular).
Q
Who discovered the nucleus? In which year?
Ans: Robert Brown, 1831
Robert Brown in 1831 discovered the nucleus while studying plant cells.
This is a very commonly asked question. Note: Robert Hooke discovered cells (1665) in dead cork, Leeuwenhoek discovered living cells (1674), and Robert Brown discovered the nucleus (1831) — three different scientists for three different discoveries.
Q
Cell theory was proposed by which scientists? What was Virchow's contribution?
Ans: Schleiden & Schwann (1838–39); Virchow added "Omnis cellula-e-cellula"
Schleiden (1838) — studied plants and proposed all plants made of cells.
Schwann (1839) — studied animals and proposed all animals made of cells. Together they proposed cell theory.
Virchow (1855) modified it by adding that new cells arise ONLY from pre-existing cells — "Omnis cellula-e-cellula" (Every cell from a cell). This explained cell reproduction and removed the earlier drawback that didn't explain cell origin.
2. Types of Organisms Based on Cell Number
TypeDefinitionExamples
UnicellularOrganism contains only ONE cell. Can live and exist independently.Bacteria, BGA (Blue-Green Algae/Cyanobacteria), Protista (unicellular eukaryotes), Yeast, Chlamydomonas, Amoeba
MulticellularOrganism contains many cells. Different types of cells perform different functions.All higher plants and animals
Unicellular organisms can live and exist independently as a single cell. In multicellular organisms, a single cell cannot survive independently — all cells are pooled together.
3. Prokaryotic vs Eukaryotic Cell
FeatureProkaryotic CellEukaryotic Cell
Nuclear membraneAbsent — no true nucleus (nucleoid region)Present — well-defined nucleus with nuclear envelope
Membrane-bound organellesAbsentPresent (mitochondria, ER, Golgi, etc.)
Ribosome70S (50S + 30S)80S (60S + 40S) in cytoplasm; 70S in mitochondria & chloroplast
Cell sizeGenerally smaller (1–10 μm)Larger (10–100 μm)
DNACircular, naked (no histone proteins), found in nucleoidLinear, associated with histone proteins, in nucleus
Cell wallPresent (made of peptidoglycan/murein in bacteria)Present in plants (cellulose), absent in animals
Centrosome/CentrioleAbsentPresent in animal cells (absent in plant cells)
ExamplesBacteria, Cyanobacteria (BGA), Mycoplasma, PPLOPlants, Animals, Fungi, Protista
Cell Size Facts
Cell / OrganismSize / Shape
Smallest living cellMycoplasma / PPLO — 0.3 μm diameter (also has no nucleus)
Largest isolated single cellOstrich egg — largest cell visible to naked eye
Longest cell in human bodyNerve cell (Neuron) — long and branched
RBC (Red Blood Cell)Round, biconcave, no nucleus in humans
WBCAmoeboid shape
Typical bacteria1–5 μm length (rod-shaped) to 3–5 μm (round)
E. coli~1 μm long, divides every 20 min
Shapes of Bacteria
ShapeNameExample
Round/SphericalCoccus (pl. Cocci)Streptococcus, Diplococcus
Rod-shapedBacillusE. coli, Lactobacillus
Comma-shapedVibrioVibrio cholerae
Spiral-shapedSpirillumSpirillum
Q
What is the smallest living cell? What is special about it?
Ans: Mycoplasma (PPLO) — 0.3 μm
Mycoplasma / PPLO (Pleuro Pneumonia Like Organism) is the smallest living cell with a diameter of about 0.3 μm (some sources say 0.1–0.5 μm).
Special features: It has NO cell wall (only plasma membrane) and is the smallest independently existing cell. It is a prokaryote. It causes diseases like walking pneumonia, urogenital infections.
Contrast: Smallest cell ≠ smallest organism. Viruses are smaller but are non-cellular (not truly living).
Q
What are the fundamental similarities between all prokaryotic cells despite their diverse shapes and sizes?
Ans: All share basic structure, size, organization fundamentally similar
Despite having different shapes (cocci, bacilli, vibrio, spirillum) and sizes, all prokaryotic cells share:
1. Absence of membrane-bound nucleus (nucleoid region instead)
2. Absence of membrane-bound organelles
3. 70S ribosomes
4. Circular naked DNA (no histones)
5. Cell wall present (peptidoglycan in eubacteria)
6. Basic metabolic pathways similar
The diversity is mostly in shape, size, and surface structures (flagella, pili) — but internal organization is fundamentally similar.
4. Prokaryotic Cell – Detailed Structure
Cell Envelope (3 Layers from outside in)
Gram Staining
FeatureGram Positive (+)Gram Negative (−)
Retain Gram stain?Yes — retains Crystal violet stain (purple/blue)No — does not retain stain (pink/red after counterstain)
Cell wallThick peptidoglycan layerThin peptidoglycan + outer lipopolysaccharide layer
ExampleStreptococcus, StaphylococcusE. coli, Salmonella
Nucleoid
Plasmid
Ribosomes in Prokaryotes
Inclusion Bodies
Flagella in Bacteria
Pili (Fimbriae)
Q
What is the difference between pili and fimbriae?
Ans:
Pili: Longer tubular structures on bacteria surface. Main function = transfer of DNA from one bacterium to another during conjugation. Made of pilin protein.
Fimbriae: Short, bristle-like projections on bacteria surface. Main function = help bacteria attach to host tissues (important for pathogenesis). Visible only under electron microscope. Made of fimbrin protein.
Key difference: Pili = DNA transfer (conjugation) | Fimbriae = attachment to host
Q
What is a plasmid? Why is it important in genetic engineering?
Ans:
Plasmid is extra-chromosomal, small, circular, double-stranded DNA found in bacteria (separate from main genomic DNA).
It can replicate independently of chromosomal DNA and provides various phenotypic characters like antibiotic resistance.
In genetic engineering: Plasmids are used as vectors — the foreign gene of interest is inserted into the plasmid, which is then introduced into a bacterial host cell. The bacteria then replicates, producing multiple copies of the foreign gene (cloning). This is the basis of recombinant DNA technology.
5. Eukaryotic Cell – Plant vs Animal Cell
FeaturePlant CellAnimal Cell
Cell wallPresent (cellulose)Absent
Central vacuolePresent (large — ~90% of cell volume)Absent (small contractile vacuoles in some)
Plastids (Chloroplast)PresentAbsent
CentrioleAbsent (except lower plants)Present
Plasma membranePresentPresent
MitochondriaPresentPresent
NucleusPresentPresent
ER, Golgi, RibosomesPresentPresent
Typical plant cell example: Onion peel cell | Typical animal cell example: Human cheek cell
6. Cell Membrane (Plasma Membrane)
Chemical Composition
Fluid Mosaic Model
Proposed by Singer and Nicolson (1972)
Most accepted model of plasma membrane structure
Key features:
• Lipid bilayer is fluid — lipids can move laterally (provides fluidity)
• Proteins are embedded in the lipid bilayer like tiles in a mosaic (hence "mosaic")
• Lipid to protein ratio = 40:60 (protein-rich) but varies between cell types
• Proteins can be peripheral (on surface) or integral/intrinsic (buried in membrane)
Type of ProteinLocationAlso Called
Peripheral proteinsOn surface of lipid bilayer (not buried)Extrinsic proteins — easily extracted
Integral / Intrinsic proteinsPartially or fully buried in lipid bilayerTransmembrane proteins (span full bilayer)
Functions of Cell Membrane
Transport Across Membrane
TypeDirectionEnergy needed?Examples
Passive Transport (Simple Diffusion)High conc → Low concNo (ATP not needed)O₂, CO₂, small non-polar molecules
Facilitated DiffusionHigh conc → Low concNo, but needs carrier proteinGlucose, amino acids (via protein channels)
OsmosisHigh water potential → Low water potential (across semi-permeable membrane)NoWater movement across cell membrane
Active TransportLow conc → High conc (against gradient)Yes (ATP required)Na⁺/K⁺ pump, mineral absorption by roots
Q
Fluid Mosaic Model was proposed by whom and in which year? What does "fluid" and "mosaic" mean?
Ans: Singer and Nicolson, 1972
Singer and Nicolson proposed the Fluid Mosaic Model in 1972 — it is the most widely accepted model of plasma membrane structure.
"Fluid" = The lipid bilayer is not rigid — lipid molecules can move laterally within the bilayer. This gives the membrane its fluid nature and allows it to function dynamically (fusion, budding, etc.).
"Mosaic" = Proteins are embedded in the lipid bilayer in a non-uniform, mosaic-like pattern — like tiles set in a floor. Some proteins float on the surface (peripheral), some are partially buried, some span the entire bilayer (transmembrane).
7. Cell Wall
OrganismCell Wall Composition
ArchaebacteriaPseudopeptidoglycan (no muramic acid)
EubacteriaPeptidoglycan / Murein
FungiChitin (+ cellulose, galactose, mannans, minerals like CaCO₃)
PlantsCellulose + hemicellulose + pectin + some proteins
AnimalsAbsent
Plant Cell Wall Layers
Plasmodesmata: Channels that pass through cell wall connecting neighbouring plant cells together. Traverse the cell wall via pectate.
8. Endomembrane System

The endomembrane system includes membrane-bound organelles inside the cell that work in a coordinated manner: Endoplasmic Reticulum → Golgi Apparatus → Lysosomes → Vacuoles

Mitochondria, Chloroplast and Peroxisomes are NOT part of endomembrane system — they work independently (semi-autonomous organelles).
Endoplasmic Reticulum (ER)
TypeFeatureFunction
Rough ER (RER)Has ribosomes on surface (looks rough)Protein synthesis and secretion. Helps in formation of cell membrane.
Smooth ER (SER)No ribosomes (smooth appearance)Lipid synthesis, detoxification, glycogen metabolism, drug detoxification
Golgi Apparatus
Functions of Golgi Apparatus:
• Processing, packaging and secretion of proteins and lipids
• Glycosylation of proteins (adding sugar chains) → glycoproteins
• Modification of proteins from ER before secretion
• Formation of lysosomes
• Principal site of carbohydrate synthesis
Lysosomes
Vacuoles
Q
Why are lysosomes called suicidal bags of the cell?
Ans: Because they can digest the entire cell content including the cell itself.
Lysosomes contain powerful hydrolytic enzymes that can break down all types of biological macromolecules — proteins, lipids, carbohydrates, nucleic acids.
These enzymes work at an acidic pH (~5) maintained by a proton pump (H⁺ ATPase).
In normal conditions, the lysosomal membrane keeps these enzymes contained. But when the membrane ruptures — either in damaged/dead cells or during programmed cell death (apoptosis) — these enzymes are released and digest the entire cell content, including the organelles.
This self-digestion process = autolysis. This ability to destroy their own cell earns lysosomes the name "suicidal bags."
Q
What is tonoplast? What does it store?
Ans: Tonoplast = membrane surrounding central vacuole in plant cells
Tonoplast is the membrane that surrounds the central vacuole in plant cells.
The central vacuole (bounded by tonoplast) stores: water, inorganic ions, minerals, proteins, amino acids, and pigments like anthocyanin (responsible for blue, red, and purple colour of flowers and fruits).
The central vacuole occupies up to 90% of the cell volume in mature plant cells, pushing the nucleus to the periphery.
9. Mitochondria
Structure
PartDetails
Outer membraneSmooth, freely permeable to small molecules (porin channels)
Inner membraneLess permeable than outer membrane. Has inward folds called cristae — increase surface area for ATP synthesis. Contains ATP synthase enzymes.
Intermembrane spaceSpace between outer and inner membranes
Matrix (mitochondrial matrix)Semifluid interior — contains own circular DNA, 70S ribosomes, enzymes of Krebs cycle
Semi-Autonomous Nature (Endosymbiotic Theory)
Mitochondria are both similar to bacteria AND to eukaryotic organelles. They have 70S ribosomes (like bacteria) but are found in eukaryotic cells. Most proteins are encoded by nuclear DNA and imported into mitochondria.
Q
Why is mitochondria called a semi-autonomous organelle?
Ans: Because it has own DNA, ribosomes, and can make some of its own proteins, but still depends on nuclear DNA.
Mitochondria are called semi-autonomous because:
1. They have own circular DNA (like prokaryotes)
2. They have 70S ribosomes (like bacteria)
3. They can synthesize some of their own proteins
4. They can divide by binary fission
However, they are NOT fully autonomous because: Most of their proteins (>95%) are encoded by nuclear DNA and must be imported from the cytoplasm. They cannot live independently outside the cell.
This semi-autonomous nature supports the Endosymbiotic Theory proposed by Lynn Margulis.
10. Plastids
TypeColourPigment/ContentFunction/Location
ChloroplastGreenChlorophyll + CarotenoidsPhotosynthesis — leaves and green parts
ChromoplastYellow, Orange, RedCarotenoids (carotene, xanthophyll)Attract pollinators — flowers and fruits
LeucoplastColourlessStores starch/oils/proteinsStorage — seeds, roots
⚡ Leucoplast types
Amyloplast → stores starch | Elaioplast → stores oils/fats | Aleuroplast → stores proteins
Chloroplast — Detailed Structure
PartDetails
Outer membranePermeable to small molecules
Inner membraneLess permeable — selective transport
Stroma (matrix)Fluid-filled interior — contains own circular DNA, 70S ribosomes, enzymes for Calvin cycle (dark reactions)
GranaStacks of disc-like thylakoids (like stack of coins). Each stack = granum (pl. grana). Site of light reactions / photosystems.
ThylakoidsFlat membranous sacs arranged in grana. Contain chlorophyll and carotenoids. Site of light-dependent reactions.
Stroma lamellaeMembranous connections between grana stacks
Q
What are chromoplasts? Where are they found and what is their significance?
Ans: Chromoplasts are coloured plastids containing carotenoid pigments.
Chromoplasts contain carotenoid pigments (carotene = orange/yellow, xanthophyll = yellow), lycopene (red in tomatoes), and other pigments.
Found in: petals of flowers, fruits (like ripe tomatoes, red peppers, carrot root), and some roots.
Significance: Their bright colours attract pollinators (bees, butterflies) and seed dispersers (birds, animals) — important for reproduction and seed dispersal.
Chloroplasts can convert to chromoplasts as fruits ripen (green tomato → red tomato = chloroplast → chromoplast conversion).
11. Nucleus
Structure of Nucleus
PartDetails
Nuclear EnvelopeDouble membrane (outer + inner nuclear membrane) with nuclear pores. Outer membrane continuous with ER. Nuclear pores allow bidirectional transport — mRNA goes OUT, proteins come IN.
NucleoplasmSemifluid material inside nucleus — contains nucleolus, chromatin, and nuclear proteins
NucleolusDense, darkly staining, membraneless structure. Site of rRNA synthesis and ribosome assembly. Size 0.5–1 μm. Cells making large amounts of protein → larger nucleolus. Can be one or more per nucleus. Continuous with nucleoplasm. Named by Flemming.
ChromatinNetwork of DNA + histone proteins in non-dividing cells. Stained by basic dyes. Named by Flemming. During cell division → condenses to form chromosomes.
Chromosomes
Types of Chromosomes Based on Centromere Position
TypeCentromere PositionShape at Anaphase
MetacentricMiddle — equal armsV-shape
Sub-metacentricSlightly off centre — unequal armsL-shape
AcrocentricNear one end — very unequal armsJ-shape
TelocentricAt the very end — only one armI-shape (rod)
Satellite chromosomes = chromosomes with secondary constriction (NOR — Nucleolus Organiser Region). Not present in all chromosomes — only in some. Human chromosomes 13, 14, 15, 21, 22 have satellites (SAT chromosomes).
Q
What is the nucleolus? What is its function? Why is it larger in some cells?
Ans: Nucleolus is site of rRNA synthesis and ribosome assembly.
Nucleolus is a dense, staining, membraneless spherical structure inside the nucleus, found in both plant and animal cells.
Function: Site of rRNA (ribosomal RNA) synthesis and ribosome subunit assembly. The rRNA genes (in nucleolus organiser region = NOR) are transcribed here, and ribosomal proteins sent from cytoplasm assemble with rRNA to form ribosome subunits.
Why larger in some cells: Cells that synthesize large amounts of protein (e.g., secretory cells, pancreatic cells) need more ribosomes → more nucleolus activity → larger nucleolus. Cells with low protein synthesis have smaller nucleolus.
Named by Flemming. Can be one or more per nucleus.
12. Cytoskeleton, Cilia, Flagella & Centrosome
Cytoskeleton
TypeDiameterProtein
Microtubules25 nm (largest)Tubulin protein
Intermediate filaments10 nmVarious proteins (keratin, vimentin, desmin)
Microfilaments (Actin filaments)7 nm (smallest)Actin protein
Cilia and Flagella
Bacterial flagella = made of flagellin protein. Eukaryotic cilia/flagella = made of tubulin protein. Different proteins — different structure!
Centrosome and Centriole
Microbodies (Peroxisomes and Glyoxysomes)
Q
What is the 9+2 arrangement in cilia/flagella? How is it different from centriole structure?
Ans: Cilia/flagella = 9+2 (9 doublets + 2 central singlets); Centriole = 9+0 (9 triplets, no central pair)
Cilia and Flagella (9+2):
— 9 peripheral doublets of microtubules arranged in a ring
— 2 central singlet microtubules in the centre (covered by central sheath)
— Peripheral doublets connected to central pair by radial spokes
— Made of tubulin protein

Centriole (9+0):
— 9 peripheral triplets of microtubules (each set of 3)
— NO central pair (hence 9+0)
— Has cartwheel pattern at proximal end
— Made of tubulin protein

Key: Both use tubulin, but cilia/flagella have DOUBLETS and CENTRAL PAIR (9+2), while centrioles have TRIPLETS and NO CENTRAL PAIR (9+0).
13. Quick Revision — All Key Points
Key FactDetail
Cell discovered byRobert Hooke (1665) — dead cork cells — book Micrographia
Living cell first described byAntonie Van Leeuwenhoek (1674)
Nucleus discovered byRobert Brown (1831)
Cell Theory proposed bySchleiden and Schwann (1838–39)
Cell Theory modified byRudolf Virchow (1855) — "Omnis cellula-e-cellula"
Smallest living cellMycoplasma / PPLO (~0.3 μm)
Largest cell (naked eye)Ostrich egg
Longest human cellNerve cell (Neuron)
Plasma membrane modelFluid Mosaic Model — Singer & Nicolson (1972)
Most abundant lipid in membranePhospholipid
Powerhouse of cellMitochondria (ATP synthesis)
Suicidal bagsLysosomes
Golgi apparatus discovered byCamillo Golgi (1898)
Golgi units in plantsDictyosomes
TonoplastMembrane surrounding central vacuole in plant cells
Mitochondria ribosome70S (like prokaryotes)
Eukaryotic cytoplasmic ribosome80S (60S + 40S)
Prokaryotic ribosome70S (50S + 30S)
Chromatin named byFlemming
Cilia/Flagella arrangement9+2 (tubulin protein)
Centriole arrangement9+0 triplets
Peroxisome enzymeCatalase (breaks H₂O₂)
GlyoxysomesIn fatty seeds — convert fat → carbohydrate. Discovered by Robert Brown.
Middle lamella made ofCalcium pectate
Cell wall of bacteriaPeptidoglycan / Murein
Pili made ofPilin protein — for conjugation
Fimbriae made ofFimbrin protein — for attachment
Bacterial flagella made ofFlagellin protein
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